Percorrer por autor "Zoio, Paulo"
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- Quality monitoring of biodiesel and diesel/biodiesel blends: a comparison between benchtop FT-NIR versus a portable miniaturized NIR spectroscopic analysisPublication . Monteiro, Luísa; Zoio, Paulo; Carvalho, Bernardo B.; Fonseca, Luís P. P.; Calado, CecíliaA methodology such as near-infrared (NIR) spectroscopy, which enables in situ and in real-time analysis, is crucial to perform quality control of biodiesel, since it is blended into diesel fuel and the presence of contaminants can hinder its performance. This work aimed to compare the performance of a benchtop Fourier Transform (FT) NIR spectrometer with a prototype of a portable, miniaturized near-infrared spectrometer (miniNIR) to detect and quantify contaminants in biodiesel and biodiesel in diesel. In general, good models based on principal component analysis-linear discriminant analysis (PCA-LDA) of FT-NIR spectra were obtained, predicting with high accuracies biodiesel contaminants and biodiesel in diesel (between 75% to 95%), as well as good partial least square (PLS) regression models to predict contaminants concentration in biodiesel and biodiesel concentration in diesel/biodiesel blends, with high coefficients of determination (between 0.83 and 0.99) and low prediction errors. The miniNIR prototype’s PCA-LDA models enabled the prediction of target contaminants with good accuracies (between 66% and 86%), and a PLS model enabled the prediction of biodiesel concentration in diesel with a reasonable coefficient of determination (0.68), pointing to the device’s potential for preliminary analysis of biodiesel which, associated with its potential low cost and portability, could increase biodiesel quality control.
- Technologies for high-throughput identification of antibiotic mechanism of actionPublication . Ribeiro Da Cunha, Bernardo; Zoio, Paulo; Fonseca, Luís P. P.; Calado, CecíliaThere are two main strategies for antibiotic discovery: target-based and phenotypic screening. The latter has been much more successful in delivering first-in-class antibiotics, despite the major bottleneck of delayed Mechanism-of-Action (MOA) identification. Although finding new antimicrobial compounds is a very challenging task, identifying their MOA has proven equally challenging. MOA identification is important because it is a great facilitator of lead optimization and improves the chances of commercialization. Moreover, the ability to rapidly detect MOA could enable a shift from an activity-based discovery paradigm towards a mechanism-based approach. This would allow to probe the grey chemical matter, an underexplored source of structural novelty. In this study we review techniques with throughput suitable to screen large libraries and sufficient sensitivity to distinguish MOA. In particular, the techniques used in chemical genetics (e.g., based on overexpression and knockout/knockdown collections), promoter-reporter libraries, transcriptomics (e.g., using microarrays and RNA sequencing), proteomics (e.g., either gel-based or gel-free techniques), metabolomics (e.g., resourcing to nuclear magnetic resonance or mass spectrometry techniques), bacterial cytological profiling, and vibrational spectroscopy (e.g., Fourier-transform infrared or Raman scattering spectroscopy) were discussed. Ultimately, new and reinvigorated phenotypic assays bring renewed hope in the discovery of a new generation of antibiotics.
- Validation of a miniaturised near infrared spectrometer for contaminant assessment in biodieselPublication . Monteiro, Luísa; Zoio, Paulo; Carvalho, M. B. P.; Fonseca, Luís P. P.; Calado, CecíliaA new method to simultaneously predict cells viability, proliferation and metabolic status, in a rapid, simple but also specific and sensitive mode was developed. The method is based on mid-infrared (MIR) spectroscopic analysis of cells. As model system were used Human embryonic kidney (HEK) 293 cells and T lymphocytes. After submitting cells to different environments as the toxic dimethyl sulfoxide, or metabolic activation, cells viability was analyzed by optical microscopy after coloration with trypan blue, and the cell count was determined with a Neubauer hemocytometer. The principal component analysis (PCA) of the cells second derivative spectra enabled to discriminate the cells viability and the cells proliferation as assayed by conventional methods, while spectra PCA and Hierarchical Cluster Analysis (HCA) enabled to discriminate T cells metabolic activation. The new methods, based on MIR spectroscopy, present the advantages of being applicable in automatic, simple and high-throughput mode in relation to the conventional methods.