Percorrer por autor "Pozdniakova, Sofya"
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- The indoor microbiome: sampling, analysis and emerging trendsPublication . Šunić, Iva; Šarac, Jelena; Auguštin, Dubravka Havaš; Pozdniakova, Sofya; Ferguson, Robert M.; Jergović, Matijana; Visentin, David; Borràs, Silvia; Archer, Elizabeth; Henderson, Drew K.; Vitko, Sandra; Ašić, Adna; Bošnjaković, Anja; Maglica, Željka; Viegas, Carla; Novokmet, Natalija; Karlović, Nina; Marjanović, Damir; Muszyński, Adam; Liu, Yuxi; Karisola, Piia; Alenius, Harri; Krych, Lukasz; Lovrić, MarioIndoor spaces contain diverse microbial communities that shape human health. These microorganisms are particularly relevant to respiratory diseases, including asthma and allergies. Despite growing recognition of the importance of indoor microbial exposures, research in this field is slowed by differences in methods. These inconsistencies make it difficult to compare results and draw conclusions. This systematic review analyses 106 studies published between 2000 and 2025 that investigated indoor microbiomes in dust, air, and other matrices across homes, schools, and other built environments. We assessed sampling strategies, DNA extraction protocols, sequencing technologies, and bioinformatic pipelines, identifying trends, inconsistencies, and areas requiring harmonisation. Passive sampling, particularly dust collection, was the most common approach, while Illumina-based 16S rRNA and ITS amplicon sequencing dominated molecular analyses. However, variations in targeted gene regions, extraction kits, and analytical tools limited cross-study comparability. Ecological findings revealed consistent detection of bacterial taxa such as Staphylococcus, Streptococcus, and Corynebacterium, and fungal taxa including Cladosporium, Aspergillus, and Penicillium, with diversity shaped by building characteristics, ventilation, humidity, occupancy, and presence of pets. This review highlights the need for standardised protocols in indoor microbiome research to facilitate reproducibility, enable meta-analyses, and inform health-related guidelines for indoor environments.
- Microbial contamination in grocery stores from Portugal and Spain: the neglected indoor environment to be tackled in the scope of the One Health approachPublication . Viegas, Carla; Gomes, Bianca; Cervantes, Renata; Moreira, Sílvia; Dias, Marta; Pena, Pedro; Carolino, Elisabete; Twarużek, Magdalena; Kosicki, Robert; Soszczyńska, Ewelina; Caetano, Liliana Aranha; Cañas, Lídia; Pozdniakova, Sofya; Borràs, Sílvia; Viegas, SusanaMicrobial contamination in grocery shops (GS) should be evaluated since food commodities are commonly handled by workers and customers increasing the risk of food contamination and disease transmission. The aim of this study was to evaluate the microbial contamination in Portuguese and Spanish GS with a multi-approach protocol using passive (electrostatic dust cloths and surface swabs) sampling methods. The molecular detection of Aspergillus sections, mycotoxin analysis, screening of azole resistance as well as cytotoxicity measurement was conducted to better estimate the potential health risks of exposure and to identify possible relations between the risk factors studied. The fruits/vegetables sampling location was the one identified as being the most contaminated (bacteria and fungi) area in GS from both countries. Aspergillus section Fumigati and Fusarium species were observed in samples from Portuguese groceries with reduced susceptibilities to azoles commonly used in the clinical treatment of fungal infections. Fumonisin B2 has been detected in Portuguese GS possibly unveiling this emergent threat concerning occupational exposure and food safety. Overall, the results obtained raise concerns regarding human health and food safety and must be surveilled by applying a One Health approach.
- Promoting global collaboration to improve bioaerosol exposure assessment and understanding of associated health impacts: outcomes from a series of workshopsPublication . Marczylo, Emma L.; Jackson, Simon; Bell, Christine; Andrews, Daniel; Clift, Martin J. D.; Crawford, Ian; Fejer, Gyorgy; Ferguson, Robert M. W.; Fisher, Matthew C.; Goode, Emma-Jane; Isaac, James; Kinnersley, Rob; Morrissey, Julie A.; Pozdniakova, Sofya; Viegas, Carla; Ward, Andrew; Wouters, Inge M.; Coulon, Frederic; Nasir, Zaheer A.; Douglas, PhilippaWe are surrounded, in both indoor and outdoor environments, by air containing particles of biological origin (bioaerosols). We constantly inhale them, and, depending upon their size, they deposit in different parts of our airways. Despite their ubiquitous nature and our constant exposure, bioaerosol diversity and composition of the environment are not well characterized, and we understand little about which bioaerosols we are exposed to and how this impacts our health, either positively or negatively. Indoor/Outdoor Bioaerosols Interface and Relationships Network (BioAirNet), a Clean Air Programme-funded network, has recognized the need for the bioaerosol community to reflect on the current challenges facing bioaerosol exposure assessment and the determination of the associated cellular/molecular responses driving specific health outcomes. A series of online workshops for the bioaerosol community were hosted by BioAirNet in September 2022, which aimed to bring together global expertise to discuss the current challenges impeding improved assessment of bioaerosol exposure and understanding of the downstream cellular and molecular mechanisms driving health outcomes by discussing these challenges; considering where we need to be, where we are now and how we get there. Professional facilitation was key to their success, enabling the multidisciplinary bioaerosol community to explore and address these challenges within a focused and productive environment to prioritize themes and agree on action plans for continued momentum following the workshops. These themes were as follows: (1) conceptual model; (2) stakeholder mapping; (3) knowledge transfer; (4) writing project, and (5) conference-type event, collectively covering research, knowledge mobilization, and networking activities. A subsequent in-person follow-up workshop was held in November 2023. It provided an opportunity to share progress on the five themes, critique what had already been done, and act as a launchpad to progress the actions further. Delegates also had the opportunity to share ongoing or upcoming work, particularly projects requiring input from others, to encourage collaborative working and sharing expertise. The use of facilitated workshops is a valuable tool for all scientific communities to collectively explore and successfully address key issues within their field.