Repository logo
 
Publication

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

2017-01Journal article Restricted access
Simple item page
dc.contributor.authorNascimento, Marta
dc.contributor.authorSousa, Adriano
dc.contributor.authorRamirez, Mario
dc.contributor.authorFrancisco, Alexandre
dc.contributor.authorCarrico, Joao
dc.contributor.authorVaz, Cátia
dc.date.accessioned2018-01-19T11:30:37Z
dc.date.available2018-01-19T11:30:37Z
dc.date.issued2017-01
dc.description.abstractHigh Throughput Sequencing provides a cost effective means of generating high resolution data for hundreds or even thousands of strains, and is rapidly superseding methodologies based on a few genomic loci. The wealth of genomic data deposited on public databases such as Sequence Read Archive/European Nucleotide Archive provides a powerful resource for evolutionary analysis and epidemiological surveillance. However, many of the analysis tools currently available do not scale well to these large datasets, nor provide the means to fully integrate ancillary data. Here we present PHYLOViZ 2.0, an extension of PHYLOViZ tool, a platform independent Java tool that allows phylogenetic inference and data visualization for large datasets of sequence based typing methods, including Single Nucleotide Polymorphism ( SNP) and whole genome/core genome Multilocus Sequence Typing (wg/cgMLST) analysis. PHYLOViZ 2.0 incorporates new data analysis algorithms and new visualization modules, as well as the capability of saving projects for subsequent work or for dissemination of results.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationNASCIMENTO, Marta; [et al] – PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinformatics. ISSN 1367-4803. Vol. 33, N.º 1 (2017), pp. 128-129pt_PT
dc.identifier.doi10.1093/bioinformatics/btw582pt_PT
dc.identifier.issn1367-4803
dc.identifier.issn1460-2059
dc.identifier.urihttp://hdl.handle.net/10400.21/7948
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherOxford University Presspt_PT
dc.relation.publisherversionhttps://academic.oup.com/bioinformatics/article/33/1/128/2525691pt_PT
dc.subjectTyping datapt_PT
dc.subjectBacterialpt_PT
dc.subjectEburstpt_PT
dc.subjectToolspt_PT
dc.titlePHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methodspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/EXCL%2FEEI-ESS%2F0257%2F2012/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876/UID%2FCEC%2F50021%2F2013/PT
oaire.citation.endPage129pt_PT
oaire.citation.issue1pt_PT
oaire.citation.startPage128pt_PT
oaire.citation.titleBioinformaticspt_PT
oaire.citation.volume33pt_PT
oaire.fundingStream3599-PPCDT
oaire.fundingStream5876
person.familyNameRamirez
person.familyNameFrancisco
person.familyNameCarrico
person.familyNameVaz
person.givenNameMario
person.givenNameAlexandre
person.givenNameJoao
person.givenNameCátia
person.identifier246790
person.identifier.ciencia-id9C1C-F2A2-4226
person.identifier.ciencia-id8718-741E-BBD9
person.identifier.orcid0000-0002-4084-6233
person.identifier.orcid0000-0003-4852-1641
person.identifier.orcid0000-0002-5274-2722
person.identifier.orcid0000-0001-6074-3074
person.identifier.ridB-4993-2008
person.identifier.ridA-7367-2008
person.identifier.ridADC-1473-2022
person.identifier.scopus-author-id7201568476
person.identifier.scopus-author-id8266333200
person.identifier.scopus-author-id27267941600
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsclosedAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublicationbe3ad796-89c4-44b5-8031-cf6210126d12
relation.isAuthorOfPublicationc151b29d-016d-448b-82e7-4c012e300ee2
relation.isAuthorOfPublication5f4ad9ce-0a68-496f-a0d6-2062d39f4702
relation.isAuthorOfPublication0c5cb0fd-7cd7-4a16-86a8-7a68188e53ff
relation.isAuthorOfPublication.latestForDiscoveryc151b29d-016d-448b-82e7-4c012e300ee2
relation.isProjectOfPublicationebca3e6d-fa68-498a-8e52-f3f5df70c2c6
relation.isProjectOfPublication9964a800-3334-42d6-aab0-1f8870cbe7b1
relation.isProjectOfPublication.latestForDiscoveryebca3e6d-fa68-498a-8e52-f3f5df70c2c6

Files

Original bundle
Now showing 1 - 1 of 1
No Thumbnail Available
Name:
PHYLOViZ 2.0_CVaz_ADEETC.pdf
Size:
73.55 KB
Format:
Adobe Portable Document Format
Download
License bundle
Now showing 1 - 1 of 1
No Thumbnail Available
Name:
license.txt
Size:
1.71 KB
Format:
Item-specific license agreed upon to submission
Description:
Download

Collections

ISEL - Eng. Elect. Tel. Comp. - Artigos