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An ontology and a REST API for sequence based microbial typing data

2010Conference object Open access
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dc.contributor.authorAlmeida, João
dc.contributor.authorTiple, João
dc.contributor.authorRamirez, Mário
dc.contributor.authorMelo-Cristino, José
dc.contributor.authorVaz, Cátia
dc.contributor.authorFrancisco, Alexandre P.
dc.contributor.authorCarrico, Joao
dc.date.accessioned2021-05-12T15:34:08Z
dc.date.available2021-05-12T15:34:08Z
dc.date.issued2010
dc.description.abstractIn the Microbial typing field, the need to have a common understanding of the concepts described and the ability to share results within the community is an increasingly important requisite for the continued development of portable and accurate sequence-based typing methods. These methods are used for bacterial strain identification and are fundamental tools in Clinical Microbiology and Bacterial Population Genetics studies. In this article we propose an ontology designed for the microbial typing field, focusing on the widely used Multi Locus Sequence Typing methodology, and a RESTful API for accessing information systems based on the proposed ontology. This constitutes an important first step to accurately describe, analyze, curate, and manage information for microbial typing methodologies based on sequence based typing methodologies, and allows for the future integration with data analysis Web services.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationALMEIDA, João; [et al] – An ontology and a REST API for sequence based microbial typing data. In JBI 2010: Bioinformatics for Personalized Medicine (10th Spanish Symposium, JBI 2010). Springer:2010. ISBN: 978-3-642-28062-7. Vol. 6620, pp. 21-28pt_PT
dc.identifier.doi10.1007/978-3-642-14458-5_10pt_PT
dc.identifier.isbn978-3-642-28062-7
dc.identifier.urihttp://hdl.handle.net/10400.21/13333
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringer Verlagpt_PT
dc.subjectOntologypt_PT
dc.subjectKnowledge representationpt_PT
dc.subjectData as a servicept_PT
dc.subjectMicrobial typing methodspt_PT
dc.titleAn ontology and a REST API for sequence based microbial typing datapt_PT
dc.typeconference object
dspace.entity.typePublication
oaire.citation.conferencePlaceOctober 27-29, 2010 - Torremolinos, Spainpt_PT
oaire.citation.endPage28pt_PT
oaire.citation.startPage21pt_PT
oaire.citation.titleJBI 2010: Bioinformatics for Personalized Medicine (10th Spanish Symposium)pt_PT
oaire.citation.volume6620pt_PT
person.familyNameRamirez
person.familyNameVaz
person.familyNameCarrico
person.givenNameMario
person.givenNameCátia
person.givenNameJoao
person.identifier246790
person.identifier.ciencia-id9C1C-F2A2-4226
person.identifier.ciencia-id8718-741E-BBD9
person.identifier.orcid0000-0002-4084-6233
person.identifier.orcid0000-0001-6074-3074
person.identifier.orcid0000-0002-5274-2722
person.identifier.ridB-4993-2008
person.identifier.ridADC-1473-2022
person.identifier.ridA-7367-2008
person.identifier.scopus-author-id7201568476
person.identifier.scopus-author-id27267941600
person.identifier.scopus-author-id8266333200
rcaap.rightsopenAccesspt_PT
rcaap.typeconferenceObjectpt_PT
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relation.isAuthorOfPublication.latestForDiscovery0c5cb0fd-7cd7-4a16-86a8-7a68188e53ff

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