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PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

2016-04-29Journal article Open access
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dc.contributor.authorRibeiro-Gonçalves, Bruno
dc.contributor.authorFrancisco, Alexandre P.
dc.contributor.authorVaz, Cátia
dc.contributor.authorRamirez, Mário
dc.contributor.authorCarrico, Joao
dc.date.accessioned2021-05-10T16:43:55Z
dc.date.available2021-05-10T16:43:55Z
dc.date.issued2016-04-29
dc.description.abstractHigh-throughput sequencing methods generated allele and single nucleotide polymorphism information for thousands of bacterial strains that are publicly available in online repositories and created the possibility of generating similar information for hundreds to thousands of strains more in a single study. Minimum spanning tree analysis of allelic data offers a scalable and reproducible methodological alternative to traditional phylogenetic inference approaches, useful in epidemiological investigations and population studies of bacterial pathogens. PHYLOViZ Online was developed to allow users to do these analyses without software installation and to enable easy accessing and sharing of data and analyses results from any Internet enabled computer. PHYLOViZ Online also offers a RESTful API for programmatic access to data and algorithms, allowing it to be seamlessly integrated into any third party web service or software.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationRIBEIRO-GONÇALVES, Bruno; [et al] – PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Research. ISSN 0305-1048. Vol. 44, N.º W1 (2016), pp. W246–W251pt_PT
dc.identifier.doi10.1093/nar/gkw359pt_PT
dc.identifier.eissn1362-4962
dc.identifier.issn0305-1048
dc.identifier.urihttp://hdl.handle.net/10400.21/13318
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherOxford Academicpt_PT
dc.relationPSFRH/BD/101448/2014 - FCTpt_PT
dc.relationEEA PT06 - Govern ments of Iceland, Lichtenstein and Norwaypt_PT
dc.relation.publisherversionhttps://watermark.silverchair.com/gkw359.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArkwggK1BgkqhkiG9w0BBwagggKmMIICogIBADCCApsGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM3xD1epvmxn9WLWM3AgEQgIICbJUzxpD0u81U3oinC-tk6MAZ7nEXmuTppYdMs_pRurkGQdj_Y33WtIgJkmvcU8Jwr6CvUDxSlMl37kKRVAmtzs5p5pqr7iY657zKj0kfgztXB9_scPvzrkirIRAkCxGSxCI53gRccmEH-f6nx_74iDkR7wMSwfic2KwET1wNgG8BTFPY9lCWaE4k38gOqd3xeTg-P2OIghceMLkN4LFPqSb0nuMhfsGFMBtKWXJHER9_eonaciJ2UNgd1-sgmCbFR6hNVyFpSii1ELOrv8fRVy7T-1DADpuFJzuh2o7xekXLXQF-r1KBCT2tpJQhZIzLbcQRwwwhFfrAsqfOFtIqAEkPljFInYkQ6YY9qcXOZdc7qi3vruyrPDx6HWGFRH1HxP37L2ohDJMaQa3klyQLoRsfzgj6RKbHVpVryx-jqInZgtX8GEAOwCM9itbE4hraP2FpmZynvDQ3YTmqtrl5irUTvrEkGMj86FonxgMkze7IQH_usGL2ppNQX9lulPvQDlTsb4XfNnTL8MA5S590NYHO11A-ZgiqQn2YyGrJ0EMsmYNpuSCXVCpRkUH1JQp51NXWPxoDcvE4QNzWpl2y67k7WXWSzoMZbXcpRNefXIb7OOEl9EfnZgUVQk3pkvvbOvA02QsjvJUhh97soYJM0heXX3ThzaqQkZnXVU4KbS55bjgoAF0Nc4LiTfZyAdA6hFoGecdCUHWEDJHufGPj_ject3VbEohxcHzMywCxVsSGam_a8kUi7gecHfIOFrma7YC0uObgTqyCvajgamnJYN0C7KltWseHq7YeEgZNlRxxRzWHkRX14QnJJ8Qopt_PT
dc.subjectPHYLOViZ Onlinept_PT
dc.subjectPhylogenetic inferencept_PT
dc.subjectSpanning treespt_PT
dc.titlePHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning treespt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/EXCL%2FEEI-ESS%2F0257%2F2012/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876/UID%2FCEC%2F50021%2F2013/PT
oaire.citation.endPageW251pt_PT
oaire.citation.issueW1pt_PT
oaire.citation.startPageW246pt_PT
oaire.citation.titleNucleic Acids Researchpt_PT
oaire.citation.volume44pt_PT
oaire.fundingStream3599-PPCDT
oaire.fundingStream5876
person.familyNameVaz
person.familyNameRamirez
person.familyNameCarrico
person.givenNameCátia
person.givenNameMario
person.givenNameJoao
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person.identifier.ridADC-1473-2022
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project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
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