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TypOn: the microbial typing ontology

2014-10-18Journal article Open access
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dc.contributor.authorVaz, Cátia
dc.contributor.authorFrancisco, Alexandre P.
dc.contributor.authorSilva, Mickael
dc.contributor.authorJolley, Keith A.
dc.contributor.authorBray, James E.
dc.contributor.authorPouseele, Hannes
dc.contributor.authorRothganger, Joerg
dc.contributor.authorRamirez, Mário
dc.contributor.authorCarriço, João A.
dc.date.accessioned2018-11-05T14:08:23Z
dc.date.available2018-11-05T14:08:23Z
dc.date.issued2014-10-18
dc.description.abstractBacterial identification and characterization at subspecies level is commonly known as Microbial Typing. Currently, these methodologies are fundamental tools in Clinical Microbiology and bacterial population genetics studies to track outbreaks and to study the dissemination and evolution of virulence or pathogenicity factors and antimicrobial resistance. Due to advances in DNA sequencing technology, these methods have evolved to become focused on sequence-based methodologies. The need to have a common understanding of the concepts described and the ability to share results within the community at a global level are increasingly important requisites for the continued development of portable and accurate sequence-based typing methods, especially with the recent introduction of Next Generation Sequencing (NGS) technologies. In this paper, we present an ontology designed for the sequence-based microbial typing field, capable of describing any of the sequence-based typing methodologies currently in use and being developed, including novel NGS based methods. This is a fundamental step to accurately describe, analyze, curate, and manage information for microbial typing based on sequence based typing methods.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationVAZ, Cátia; [et al] – TypOn: the microbial typing ontology. Journal of Biomedical Semantics. ISSN 2041-1480. Vol. 5, N.º 1 (2014), pp. 1-11pt_PT
dc.identifier.doi10.1186/2041-1480-5-43pt_PT
dc.identifier.issn2041-1480
dc.identifier.urihttp://hdl.handle.net/10400.21/9000
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherBMCpt_PT
dc.relation.publisherversionhttp://www.jbiomedsem.com/content/5/1/43pt_PT
dc.subjectOntologypt_PT
dc.subjectKnowledge representationpt_PT
dc.subjectMicrobial typing methodspt_PT
dc.titleTypOn: the microbial typing ontologypt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FEIA-CCO%2F118533%2F2010/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/EXCL%2FEEI-ESS%2F0257%2F2012/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PEst-OE%2FEEI%2FLA0021%2F2013/PT
oaire.citation.endPage11pt_PT
oaire.citation.issue1pt_PT
oaire.citation.startPage1pt_PT
oaire.citation.titleJournal of Biomedical Semanticspt_PT
oaire.citation.volume5pt_PT
oaire.fundingStream3599-PPCDT
oaire.fundingStream3599-PPCDT
oaire.fundingStream3599-PPCDT
person.familyNameVaz
person.givenNameCátia
person.identifier.ciencia-id8718-741E-BBD9
person.identifier.orcid0000-0001-6074-3074
person.identifier.ridADC-1473-2022
person.identifier.scopus-author-id27267941600
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
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relation.isAuthorOfPublication.latestForDiscovery0c5cb0fd-7cd7-4a16-86a8-7a68188e53ff
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